If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ), 'gf_id' => 'HOM05D000621', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000621' ), 'data_identifier' => 'HOM05D000621', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000621', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '920', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41160' => 'bna', 'A01p41220' => 'bna', 'A02p26480' => 'bna', 'A03p49030' => 'bna', 'A04p00620' => 'bna', 'A05p00610' => 'bna', 'A05p41650' => 'bna', 'A06p06040' => 'bna', 'A07p25950' => 'bna', 'A08p10370' => 'bna', 'A09p28410' => 'bna', 'A09p49030' => 'bna', 'A09p54300' => 'bna', 'A09p65540' => 'bna', 'Aa31LG10G16240' => 'aar', 'Aa31LG1G28530' => 'aar', 'Aa31LG1G5800' => 'aar', 'Aa31LG1G7340' => 'aar', 'Aa31LG1G7360' => 'aar', 'Aa31LG1G7370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.927__928' => 'aag', 'Actinidia06113' => 'ach', 'Actinidia06114' => 'ach', 'Actinidia13344' => 'ach', 'Actinidia14248' => 'ach', 'Actinidia18476' => 'ach', 'Actinidia20973' => 'ach', 'Actinidia20974' => 'ach', 'Actinidia20975' => 'ach', 'Actinidia25347' => 'ach', 'Actinidia31344' => 'ach', 'Actinidia31382' => 'ach', 'Actinidia31569' => 'ach', 'Actinidia31570' => 'ach', 'Actinidia31571' => 'ach', 'Actinidia33024' => 'ach', 'Actinidia33389' => 'ach', 'Actinidia35214' => 'ach', 'Actinidia35509' => 'ach', 'Ah.01g015760' => 'amhyb', 'Ah.04g158500' => 'amhyb', 'Ah.07g201640' => 'amhyb', 'Ah.11g049090' => 'amhyb', 'Ah.11g049100' => 'amhyb', 'Ah.11g049110' => 'amhyb', 'Ah.11g049120' => 'amhyb', 'AL126U10030' => 'aly', 'AL1G12810' => 'aly', 'AL1G16350' => 'aly', 'AL1G19810' => 'aly', 'AL1G22510' => 'aly', 'AL1G39190' => 'aly', 'AL2G23500' => 'aly', 'AL3G17550' => 'aly', 'AL4G46740' => 'aly', 'AL4G46780' => 'aly', 'AL5G45060' => 'aly', 'AL6G35050' => 'aly', 'AL6G35070' => 'aly', 'AL7G53140' => 'aly', 'Aqoxy1G01444' => 'aox', 'Aqoxy1G01445' => 'aox', 'Aqoxy1G01447' => 'aox', 'Aqoxy1G02065' => 'aox', 'Aqoxy1G02364' => 'aox', 'Aqoxy1G04184' => 'aox', 'Aqoxy2G02611' => 'aox', 'Aqoxy2G02637' => 'aox', 'Aqoxy2G02639' => 'aox', 'Aqoxy2G02640' => 'aox', 'Aqoxy2G02644' => 'aox', 'Aqoxy2G02645' => 'aox', 'Aqoxy2G02646' => 'aox', 'Aqoxy2G02649' => 'aox', 'Aqoxy2G02650' => 'aox', 'Aqoxy2G02651' => 'aox', 'Aqoxy2G02652' => 'aox', 'Aqoxy3G01219' => 'aox', 'Aqoxy5G00224' => 'aox', 'Aqoxy6G00212' => 'aox', 'Aqoxy6G00295' => 'aox', 'Aqoxy6G00419' => 'aox', 'Aqoxy6G00420' => 'aox', 'Aqoxy6G00421' => 'aox', 'Aqoxy6G00422' => 'aox', 'Aqoxy6G00423' => 'aox', 'arahy.Tifrunner.gnm1.ann1.492HD2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CG4MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MEP28M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YAHF4W' => 'arhy', 'AT1G03300' => 'ath', 'AT1G06340' => 'ath', 'AT1G09320' => 'ath', 'AT1G11420' => 'ath', 'AT1G26540' => 'ath', 'AT2G46840' => 'ath', 'AT2G47220' => 'ath', 'AT2G47230' => 'ath', 'AT3G06520' => 'ath', 'AT3G62300' => 'ath', 'AT5G23770' => 'ath', 'AT5G23780' => 'ath', 'AT5G23800' => 'ath', 'ATR0686G219' => 'atr', 'ATR0691G208' => 'atr', 'ATR0723G052' => 'atr', 'ATR1093G018' => 'atr', 'ATR1153G034' => 'atr', 'Atru.chr1.3079' => 'acertr', 'Atru.chr1.3080' => 'acertr', 'Atru.chr1.3081' => 'acertr', 'Atru.chr1.3084' => 'acertr', 'Atru.chr1.3085' => 'acertr', 'Atru.chr10.1669' => 'acertr', 'Atru.chr12.1186' => 'acertr', 'Atru.chr12.1843' => 'acertr', 'Atru.chr12.1845' => 'acertr', 'Atru.chr12.1846' => 'acertr', 'Atru.chr2.2169' => 'acertr', 'Atru.chr2.2173' => 'acertr', 'Atru.chr2.240' => 'acertr', 'Atru.chr5.3214' => 'acertr', 'Atru.chr5.389' => 'acertr', 'Atru.chr5.395' => 'acertr', 'Atru.chr5.946' => 'acertr', 'AUR62000424' => 'cqu', 'AUR62006770' => 'cqu', 'AUR62011757' => 'cqu', 'AUR62011758' => 'cqu', 'AUR62016247' => 'cqu', 'AUR62024602' => 'cqu', 'AUR62024603' => 'cqu', 'AUR62024604' => 'cqu', 'AUR62038938' => 'cqu', 'BcaB01g01108' => 'bca', 'BcaB01g01541' => 'bca', 'BcaB02g07341' => 'bca', 'BcaB02g08112' => 'bca', 'BcaB02g08791' => 'bca', 'BcaB02g08792' => 'bca', 'BcaB02g08793' => 'bca', 'BcaB03g13421' => 'bca', 'BcaB04g18122' => 'bca', 'BcaB04g21331' => 'bca', 'BcaB04g21333' => 'bca', 'BcaB05g23877' => 'bca', 'BcaB05g23878' => 'bca', 'BcaB05g23879' => 'bca', 'BcaB05g23880' => 'bca', 'BcaB06g26206' => 'bca', 'BcaB06g26207' => 'bca', 'BcaB06g29457' => 'bca', 'BcaB07g34130' => 'bca', 'BcaC02g10295' => 'bca', 'BcaC02g12582' => 'bca', 'BcaC02g12584' => 'bca', 'BcaC03g16385' => 'bca', 'BcaC05g24786' => 'bca', 'BcaC05g29362' => 'bca', 'BcaC05g29811' => 'bca', 'BcaC05g29812' => 'bca', 'BcaC05g30032' => 'bca', 'BcaC05g30033' => 'bca', 'BcaC05g30034' => 'bca', 'BcaC07g36806' => 'bca', 'BcaC07g40715' => 'bca', 'BcaC07g41898' => 'bca', 'BcaC07g42070' => 'bca', 'BcaC07g42742' => 'bca', 'BcaC07g42745' => 'bca', 'BcaC09g47887' => 'bca', 'BcaC09g47889' => 'bca', 'BcaC09g47890' => 'bca', 'BcaC09g47891' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00170' => 'bna', 'BNapus_Darmor_BZH_scaffold_118p00180' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00490' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00560' => 'bna', 'BolC1t05625H' => 'bol', 'BolC1t05626H' => 'bol', 'BolC1t05627H' => 'bol', 'BolC1t05778H' => 'bol', 'BolC1t05784H' => 'bol', 'BolC2t10254H' => 'bol', 'BolC2t10876H' => 'bol', 'BolC4t21699H' => 'bol', 'BolC4t21700H' => 'bol', 'BolC4t24343H' => 'bol', 'BolC4t24590H' => 'bol', 'BolC5t29489H' => 'bol', 'BolC5t34311H' => 'bol', 'BolC5t34743H' => 'bol', 'BolC6t38447H' => 'bol', 'BolC8t47048H' => 'bol', 'BolC8t48105H' => 'bol', 'BolC8t51295H' => 'bol', 'BolC8t52490H' => 'bol', 'BolC9t56429H' => 'bol', 'BolC9t57611H' => 'bol', 'BolC9t57629H' => 'bol', 'BraA01t04442Z' => 'bra', 'BraA02t07651Z' => 'bra', 'BraA04t15783Z' => 'bra', 'BraA05t19058Z' => 'bra', 'BraA05t19059Z' => 'bra', 'BraA05t22885Z' => 'bra', 'BraA06t23815Z' => 'bra', 'BraA07t30241Z' => 'bra', 'BraA07t30242Z' => 'bra', 'BraA08t33037Z' => 'bra', 'BraA09t40842Z' => 'bra', 'BraA09t41899Z' => 'bra', 'C01p27990' => 'bna', 'C02p42130' => 'bna', 'C02p42140' => 'bna', 'C04p00660' => 'bna', 'C04p00670' => 'bna', 'C04p13160' => 'bna', 'C04p30710' => 'bna', 'C05p07310' => 'bna', 'C05p56470' => 'bna', 'C05p60860' => 'bna', 'C08p02500' => 'bna', 'C08p02520' => 'bna', 'C08p02550' => 'bna', 'C08p37180' => 'bna', 'C08p49530' => 'bna', 'C09p35960' => 'bna', 'C09p44090' => 'bna', 'CAN.G1033.3' => 'can', 'CAN.G1076.39' => 'can', 'CAN.G1389.26' => 'can', 'CAN.G194.21' => 'can', 'CAN.G293.6' => 'can', 'CAN.G438.86' => 'can', 'CAN.G456.16' => 'can', 'CAN.G456.17' => 'can', 'CAN.G456.18' => 'can', 'CAN.G456.2' => 'can', 'CAN.G64.9' => 'can', 'CAN.G65.66' => 'can', 'CAN.G65.67' => 'can', 'CAN.G65.95' => 'can', 'CANSAT11G1224' => 'cansat', 'CANSAT11G1282' => 'cansat', 'CANSAT11G1840' => 'cansat', 'CANSAT21G1796' => 'cansat', 'CANSAT35G1334' => 'cansat', 'CANSAT54G1464' => 'cansat', 'CANSAT64G2764' => 'cansat', 'CANSAT78G0069' => 'cansat', 'CANSAT78G0416' => 'cansat', 'CANSAT80G2077' => 'cansat', 'CANSAT80G2825' => 'cansat', 'CARHR002600' => 'chi', 'CARHR002610' => 'chi', 'CARHR005900' => 'chi', 'CARHR005930' => 'chi', 'CARHR005940' => 'chi', 'CARHR005960' => 'chi', 'CARHR009280' => 'chi', 'CARHR011680' => 'chi', 'CARHR011690' => 'chi', 'CARHR011700' => 'chi', 'CARHR025430' => 'chi', 'CARHR081070' => 'chi', 'CARHR142610' => 'chi', 'CARHR142620' => 'chi', 'CARHR172640' => 'chi', 'CARHR189720' => 'chi', 'CARHR189730' => 'chi', 'CARHR189760' => 'chi', 'CARHR262540' => 'chi', 'Carub.0001s0241' => 'cru', 'Carub.0001s0570' => 'cru', 'Carub.0001s0866' => 'cru', 'Carub.0001s2450' => 'cru', 'Carub.0003s0598' => 'cru', 'Carub.0004s2996' => 'cru', 'Carub.0005s2902' => 'cru', 'Carub.0006s2152' => 'cru', 'Carub.0006s2153' => 'cru', 'Ca_00956_v3' => 'car', 'Ca_02028_v3' => 'car', 'Ca_10185_v3' => 'car', 'Ca_18110_v3' => 'car', 'Ca_18874_v3' => 'car', 'Ca_18882_v3' => 'car', 'Ca_28221_v3' => 'car', 'Cc01_g21640' => 'ccan', 'Cc01_g21650' => 'ccan', 'Cc02_g35280' => 'ccan', 'Cc03_g11460' => 'ccan', 'Cc03_g11500' => 'ccan', 'Cc05_g08320' => 'ccan', 'Cc05_g08330' => 'ccan', 'Cc05_g11190' => 'ccan', 'CDE05G1744' => 'cde', 'CDE11G0246' => 'cde', 'Cfa005755' => 'cfa', 'Cfa007381' => 'cfa', 'Cfa023334' => 'cfa', 'Ciclev10001744m.g' => 'ccl', 'Ciclev10018775m.g' => 'ccl', 'Ciclev10023940m.g' => 'ccl', 'CiPaw.04G132400' => 'cil', 'CiPaw.07G031400' => 'cil', 'CiPaw.07G120400' => 'cil', 'CiPaw.07G182000' => 'cil', 'CiPaw.08G086900' => 'cil', 'ClCG09G004910' => 'cla', 'COL.COLO4_05529' => 'col', 'COL.COLO4_07367' => 'col', 'COL.COLO4_08200' => 'col', 'COL.COLO4_14820' => 'col', 'COL.COLO4_15144' => 'col', 'COL.COLO4_23189' => 'col', 'COL.COLO4_31300' => 'col', 'Cpa.g.c31482' => 'cpa', 'Cpa.g.c32331' => 'cpa', 'Cpa.g.c34571' => 'cpa', 'Cpa.g.c43820' => 'cpa', 'Cpa.g.c45528' => 'cpa', 'Cpa.g.sc18.95' => 'cpa', 'Cpa.g.sc48.181' => 'cpa', 'Cpa.g.sc52.170' => 'cpa', 'Cpa.g.sc52.171' => 'cpa', 'Cpa.g.sc52.172' => 'cpa', 'Cpa.g.sc52.173' => 'cpa', 'Cpa.g.sc551.1' => 'cpa', 'Cpa.g.sc551.2' => 'cpa', 'Cpa.g.sc551.3' => 'cpa', 'Cpa.g.sc693.1' => 'cpa', 'Cpa.g.sc693.2' => 'cpa', 'CsaV3_7G030170' => 'csa', 'CsaV3_7G030180' => 'csa', 'CSS0001187' => 'camsi', 'CSS0003716' => 'camsi', 'CSS0007912' => 'camsi', 'CSS0010554' => 'camsi', 'CSS0034220' => 'camsi', 'CSS0036864' => 'camsi', 'CSS0046820' => 'camsi', 'DCAR_001915' => 'dca', 'DCAR_002112' => 'dca', 'DCAR_002907' => 'dca', 'DCAR_005738' => 'dca', 'DCAR_005741' => 'dca', 'DCAR_007128' => 'dca', 'DCAR_007129' => 'dca', 'DCAR_007130' => 'dca', 'DCAR_007874' => 'dca', 'DCAR_011628' => 'dca', 'DCAR_018262' => 'dca', 'DCAR_018263' => 'dca', 'DCAR_018264' => 'dca', 'DCAR_018265' => 'dca', 'DCAR_018266' => 'dca', 'DCAR_018268' => 'dca', 'DCAR_023272' => 'dca', 'DCAR_023932' => 'dca', 'DCAR_026976' => 'dca', 'DCAR_028263' => 'dca', 'DCAR_030426' => 'dca', 'Dinv01556' => 'din', 'Dinv05993' => 'din', 'Dinv08798' => 'din', 'Dinv14988' => 'din', 'Dinv30910' => 'din', 'Dinv30911' => 'din', 'Dinv33141' => 'din', 'Dinv33142' => 'din', 'Dinv36792' => 'din', 'Dinv40674' => 'din', 'Duzib128G0876' => 'dzi', 'Duzib133G0686' => 'dzi', 'Duzib138G1699' => 'dzi', 'Duzib151G0248' => 'dzi', 'Duzib177G0212' => 'dzi', 'Duzib211G0322' => 'dzi', 'Duzib235G1182' => 'dzi', 'ECA233G3045' => 'eca', 'ECA236G2303' => 'eca', 'ECA238G0422' => 'eca', 'ECA246G1254' => 'eca', 'ECA247G0073' => 'eca', 'ECA248G1630' => 'eca', 'ECA248G2920' => 'eca', 'EL10Ac3g05555' => 'bvu', 'EL10Ac4g09498' => 'bvu', 'EL10Ac6g14411' => 'bvu', 'EL10Ac8g19755' => 'bvu', 'EL10As5g23608' => 'bvu', 'EL10As5g23609' => 'bvu', 'Eucgr.B01689' => 'egr', 'Eucgr.E01742' => 'egr', 'Eucgr.H00912' => 'egr', 'Eucgr.H04076' => 'egr', 'Eucgr.J01526' => 'egr', 'Eucgr.L00253' => 'egr', 'FAN01G0735' => 'fan', 'FAN01G0852' => 'fan', 'FAN01G2412' => 'fan', 'FAN02G1176' => 'fan', 'FAN02G2063' => 'fan', 'FAN03G0157' => 'fan', 'FAN03G0323' => 'fan', 'FAN03G3413' => 'fan', 'FAN05G0194' => 'fan', 'FAN05G3124' => 'fan', 'FAN05G5074' => 'fan', 'FAN05G5249' => 'fan', 'FAN06G4196' => 'fan', 'FAN06G4464' => 'fan', 'FAN07G2593' => 'fan', 'FAN09G0043' => 'fan', 'FAN09G0673' => 'fan', 'FAN09G1138' => 'fan', 'FAN09G2197' => 'fan', 'FAN10G0610' => 'fan', 'FAN12G0779' => 'fan', 'FAN12G2641' => 'fan', 'FAN14G2097' => 'fan', 'FAN14G2616' => 'fan', 'FAN14G4065' => 'fan', 'FAN14G5133' => 'fan', 'FAN14G5271' => 'fan', 'FAN15G1106' => 'fan', 'FAN15G1745' => 'fan', 'FAN19G2659' => 'fan', 'FAN20G0060' => 'fan', 'FAN20G3012' => 'fan', 'FAN23G0943' => 'fan', 'FAN24G1261' => 'fan', 'FAN24G2994' => 'fan', 'FAN26G2638' => 'fan', 'FAN27G1190' => 'fan', 'FAN28G1859' => 'fan', 'FvH4_1g26800' => 'fve', 'FvH4_2g23230' => 'fve', 'FvH4_4g20700' => 'fve', 'FvH4_6g05270' => 'fve', 'FvH4_6g07840' => 'fve', 'FvH4_6g14460' => 'fve', 'FvH4_6g14470' => 'fve', 'FvH4_7g26470' => 'fve', 'FvH4_7g26480' => 'fve', 'FvH4_7g33450' => 'fve', 'Glyma.02G064600' => 'gma', 'Glyma.06G277700' => 'gma', 'Glyma.09G032501' => 'gma', 'Glyma.09G130100' => 'gma', 'Glyma.09G141900' => 'gma', 'Glyma.12G127600' => 'gma', 'Glyma.15G137550' => 'gma', 'Glyma.20G095500' => 'gma', 'Gohir.A01G035700' => 'ghi', 'Gohir.A03G017816' => 'ghi', 'Gohir.A03G017832' => 'ghi', 'Gohir.A03G017848' => 'ghi', 'Gohir.A03G017864' => 'ghi', 'Gohir.A03G017880' => 'ghi', 'Gohir.A05G155000' => 'ghi', 'Gohir.A08G120300' => 'ghi', 'Gohir.A13G013700' => 'ghi', 'Gohir.A13G013800' => 'ghi', 'Gohir.A13G176300' => 'ghi', 'Gohir.D01G023580' => 'ghi', 'Gohir.D03G153616' => 'ghi', 'Gohir.D03G153632' => 'ghi', 'Gohir.D03G153648' => 'ghi', 'Gohir.D03G153664' => 'ghi', 'Gohir.D03G153680' => 'ghi', 'Gohir.D03G153700' => 'ghi', 'Gohir.D03G153750' => 'ghi', 'Gohir.D05G158000' => 'ghi', 'Gohir.D08G141200' => 'ghi', 'Gohir.D13G011750' => 'ghi', 'Gohir.D13G014750' => 'ghi', 'Gohir.D13G014900' => 'ghi', 'Gohir.D13G015000' => 'ghi', 'Gohir.D13G182700' => 'ghi', 'Gorai.002G031600' => 'gra', 'Gorai.003G161300' => 'gra', 'Gorai.003G161400' => 'gra', 'Gorai.003G161500' => 'gra', 'Gorai.003G161600' => 'gra', 'Gorai.003G161700' => 'gra', 'Gorai.003G161800' => 'gra', 'Gorai.003G161900' => 'gra', 'Gorai.004G145200' => 'gra', 'Gorai.009G162600' => 'gra', 'Gorai.013G012900' => 'gra', 'Gorai.013G016000' => 'gra', 'Gorai.013G016200' => 'gra', 'Gorai.013G016500' => 'gra', 'Gorai.013G208100' => 'gra', 'GSVIVG01028157001' => 'vvi', 'GSVIVG01031264001' => 'vvi', 'HanXRQChr01g0030221' => 'han', 'HanXRQChr01g0030231' => 'han', 'HanXRQChr01g0030241' => 'han', 'HanXRQChr01g0030251' => 'han', 'HanXRQChr04g0106261' => 'han', 'HanXRQChr05g0135641' => 'han', 'HanXRQChr05g0148601' => 'han', 'HanXRQChr06g0168081' => 'han', 'HanXRQChr10g0284791' => 'han', 'HanXRQChr10g0284811' => 'han', 'HanXRQChr10g0284821' => 'han', 'HanXRQChr11g0341191' => 'han', 'HanXRQChr14g0449571' => 'han', 'HanXRQChr15g0465111' => 'han', 'HanXRQChr16g0521791' => 'han', 'HanXRQChr17g0537241' => 'han', 'HanXRQChr17g0537251' => 'han', 'HanXRQChr17g0537271' => 'han', 'Haze_04043' => 'cav', 'Haze_05080' => 'cav', 'Haze_13372' => 'cav', 'Haze_14728' => 'cav', 'Haze_22238' => 'cav', 'Haze_22242' => 'cav', 'Hma1.2p1_0052F.1_g030670' => 'hma', 'Hma1.2p1_0408F.1_g146480' => 'hma', 'Hma1.2p1_0516F.1_g170500' => 'hma', 'Hma1.2p1_0965F.1_g242100' => 'hma', 'Hma1.2p1_0987F.1_g244610' => 'hma', 'Hma1.2p1_3252F.1_g334530' => 'hma', 'HPP92_002656' => 'vpl', 'HPP92_027925' => 'vpl', 'Hund03139' => 'sun', 'Hund03140' => 'sun', 'Hund07303' => 'sun', 'Hund09660' => 'sun', 'Hund09661' => 'sun', 'Lalb_Chr01g0005991' => 'lal', 'Lalb_Chr02g0147681' => 'lal', 'Lalb_Chr03g0029901' => 'lal', 'Lalb_Chr06g0167411' => 'lal', 'Lalb_Chr15g0089071' => 'lal', 'Lalb_Chr21g0310171' => 'lal', 'Lj1A14T72' => 'lonja', 'Lj1A335T67' => 'lonja', 'Lj1A564T29' => 'lonja', 'Lj1C14G7' => 'lonja', 'Lj1P564T8' => 'lonja', 'Lj2A1210T30' => 'lonja', 'Lj2A613T7' => 'lonja', 'Lj2g0013379' => 'lja', 'Lj2g0023692' => 'lja', 'Lj2P614T17' => 'lonja', 'Lj3A834G67' => 'lonja', 'Lj3g0001216' => 'lja', 'Lj3g0013683' => 'lja', 'Lj3g0021474' => 'lja', 'Lj3g0026071' => 'lja', 'Lj4A474T13' => 'lonja', 'Lj4C478T4' => 'lonja', 'Lj5C325G6' => 'lonja', 'Lj5g0023541' => 'lja', 'Lj5g0023639' => 'lja', 'Lj6g0000808' => 'lja', 'Lj8C149T18' => 'lonja', 'Lsat_1_v5_gn_0_17081' => 'lsa', 'Lsat_1_v5_gn_1_115540' => 'lsa', 'Lsat_1_v5_gn_2_72140' => 'lsa', 'Lsat_1_v5_gn_4_27300' => 'lsa', 'Lsat_1_v5_gn_6_116160' => 'lsa', 'Lsat_1_v5_gn_6_15701' => 'lsa', 'Lsat_1_v5_gn_6_15721' => 'lsa', 'Lsat_1_v5_gn_8_139620' => 'lsa', 'Lsat_1_v5_gn_8_167620' => 'lsa', 'Lsat_1_v5_gn_8_76680' => 'lsa', 'Lsat_1_v5_gn_9_31941' => 'lsa', 'Manes.01G230800' => 'mes', 'Manes.03G208100' => 'mes', 'Manes.09G128200' => 'mes', 'Manes.09G178400' => 'mes', 'Manes.09G186900' => 'mes', 'MBI18_g13612_MAGBIO' => 'mbi', 'MBI19_g03282_MAGBIO' => 'mbi', 'MD01G1173400' => 'mdo', 'MD01G1179100' => 'mdo', 'MD01G1232500' => 'mdo', 'MD04G1191600' => 'mdo', 'MD04G1194400' => 'mdo', 'MD04G1194500' => 'mdo', 'MD04G1194700' => 'mdo', 'MD04G1194900' => 'mdo', 'MD04G1199300' => 'mdo', 'MD07G1101600' => 'mdo', 'MD07G1240300' => 'mdo', 'MD07G1304600' => 'mdo', 'MD07G1304800' => 'mdo', 'MD09G1286400' => 'mdo', 'MD12G1207100' => 'mdo', 'MD16G1148900' => 'mdo', 'MD17G1278800' => 'mdo', 'Medtr1g019680' => 'mtr', 'Medtr1g084210' => 'mtr', 'Medtr2g011700' => 'mtr', 'Medtr2g033390' => 'mtr', 'Medtr3g065560' => 'mtr', 'Medtr4g079830' => 'mtr', 'Medtr4g079980' => 'mtr', 'Medtr4g127390' => 'mtr', 'Medtr5g089140' => 'mtr', 'Medtr5g089220' => 'mtr', 'Medtr5g089250' => 'mtr', 'MELO3C015906.2' => 'cme', 'Migut.D00056' => 'egut', 'Migut.E00558' => 'egut', 'Migut.G00029' => 'egut', 'Migut.G00032' => 'egut', 'Migut.M00703' => 'egut', 'Migut.N00947' => 'egut', 'MSTRG.18079' => 'ama', 'MSTRG.27927' => 'ama', 'Nitab4.5_0000222g0110' => 'nta', 'Nitab4.5_0000537g0080' => 'nta', 'Nitab4.5_0000537g0090' => 'nta', 'Nitab4.5_0001095g0120' => 'nta', 'Nitab4.5_0001295g0110' => 'nta', 'Nitab4.5_0001295g0150' => 'nta', 'Nitab4.5_0001295g0170' => 'nta', 'Nitab4.5_0002945g0010' => 'nta', 'Nitab4.5_0003044g0110' => 'nta', 'Nitab4.5_0003135g0030' => 'nta', 'Nitab4.5_0003493g0030' => 'nta', 'Nitab4.5_0003574g0050' => 'nta', 'Nitab4.5_0003838g0070' => 'nta', 'Nitab4.5_0004104g0100' => 'nta', 'Nitab4.5_0004105g0010' => 'nta', 'Nitab4.5_0006949g0010' => 'nta', 'Nitab4.5_0006949g0020' => 'nta', 'Nitab4.5_0007872g0030' => 'nta', 'Nitab4.5_0007983g0010' => 'nta', 'Nitab4.5_0009783g0050' => 'nta', 'Nitab4.5_0010788g0040' => 'nta', 'Nitab4.5_0010988g0010' => 'nta', 'Nitab4.5_0012213g0030' => 'nta', 'Nitab4.5_0012301g0020' => 'nta', 'Nitab4.5_0018490g0010' => 'nta', 'Nitab4.5_0018880g0010' => 'nta', 'Nn1g04409' => 'nnu', 'Nn3g19336' => 'nnu', 'Nn4g25511' => 'nnu', 'Oeu008487.1' => 'oeu', 'Oeu013206.1' => 'oeu', 'Oeu018754.1' => 'oeu', 'Oeu020921.1' => 'oeu', 'Oeu033080.1' => 'oeu', 'Oeu034072.1' => 'oeu', 'Oeu038046.1' => 'oeu', 'Oeu048871.1' => 'oeu', 'Oeu048873.1' => 'oeu', 'Oeu053731.1' => 'oeu', 'Oeu056549.1' => 'oeu', 'Oeu062261.1' => 'oeu', 'Os01g0556800' => 'osa', 'Os05g0132400' => 'osa', 'Os11g0302800' => 'osa', 'Os11g0552100' => 'osa', 'Peaxi162Scf00028g00043' => 'pax', 'Peaxi162Scf00028g00416' => 'pax', 'Peaxi162Scf00227g00082' => 'pax', 'Peaxi162Scf00228g00737' => 'pax', 'Peaxi162Scf00330g00124' => 'pax', 'Peaxi162Scf00357g00724' => 'pax', 'Peaxi162Scf00382g00059' => 'pax', 'Peaxi162Scf00469g00022' => 'pax', 'Peaxi162Scf00770g00127' => 'pax', 'Peaxi162Scf01736g00001' => 'pax', 'PGR004G2743' => 'pgr', 'PGR031G1982' => 'pgr', 'PGR083G2389' => 'pgr', 'PGR083G2575' => 'pgr', 'PGR102G3294' => 'pgr', 'PGR142G0834' => 'pgr', 'PGR142G3473' => 'pgr', 'PGSC0003DMG400002584' => 'stu', 'PGSC0003DMG400002758' => 'stu', 'PGSC0003DMG400005608' => 'stu', 'PGSC0003DMG400009053' => 'stu', 'PGSC0003DMG400015969' => 'stu', 'PGSC0003DMG400020062' => 'stu', 'PGSC0003DMG400026947' => 'stu', 'PGSC0003DMG400027055' => 'stu', 'PGSC0003DMG400027056' => 'stu', 'PGSC0003DMG400027057' => 'stu', 'PGSC0003DMG400027076' => 'stu', 'PGSC0003DMG400035825' => 'stu', 'PGSC0003DMG400036396' => 'stu', 'PGSC0003DMG400041590' => 'stu', 'PGSC0003DMG400044084' => 'stu', 'PGSC0003DMG402020444' => 'stu', 'Phvul.002G204200' => 'pvu', 'Phvul.007G202900' => 'pvu', 'Phvul.011G130600' => 'pvu', 'Phvul.011G130700' => 'pvu', 'Potri.002G192300' => 'ptr', 'Potri.005G011100' => 'ptr', 'Potri.009G151200' => 'ptr', 'Potri.009G155250' => 'ptr', 'Potri.010G149301' => 'ptr', 'Potri.013G006900' => 'ptr', 'Potri.014G117800' => 'ptr', 'Prupe.1G112600' => 'ppe', 'Prupe.2G061500' => 'ppe', 'Prupe.2G061600' => 'ppe', 'Prupe.2G269000' => 'ppe', 'Prupe.2G269100' => 'ppe', 'Prupe.2G323100' => 'ppe', 'Prupe.3G007100' => 'ppe', 'Prupe.3G124100' => 'ppe', 'Prupe.6G295700' => 'ppe', 'Prupe.6G310200' => 'ppe', 'Prupe.6G314400' => 'ppe', 'Prupe.6G314500' => 'ppe', 'Psat0s3389g0040' => 'psa', 'Psat0s4293g0040' => 'psa', 'Psat0s4293g0120' => 'psa', 'Psat6g153280' => 'psa', 'Psat6g154280' => 'psa', 'Psat6g154320' => 'psa', 'Psat6g154400' => 'psa', 'Psat6g154440' => 'psa', 'Psat6g154480' => 'psa', 'Psat6g154520' => 'psa', 'Psat6g154560' => 'psa', 'Psat6g154600' => 'psa', 'Psat6g154680' => 'psa', 'Psat6g154720' => 'psa', 'Psat6g154800' => 'psa', 'Psat6g154840' => 'psa', 'Psat6g154880' => 'psa', 'Psat6g154920' => 'psa', 'Psat6g154960' => 'psa', 'Psat6g155000' => 'psa', 'Psat6g155040' => 'psa', 'Psat6g155080' => 'psa', 'Psat6g155120' => 'psa', 'Psat6g155200' => 'psa', 'Psat7g165520' => 'psa', 'Psat7g165560' => 'psa', 'Psat7g252320' => 'psa', 'PSO017G5399' => 'pso', 'PSO017G6724' => 'pso', 'PSO210G6820' => 'pso', 'PSO210G6837' => 'pso', 'PSO210G7275' => 'pso', 'PSO210G7639' => 'pso', 'PSO500G0015' => 'pso', 'PSO675G4312' => 'pso', 'PSO837G0028' => 'pso', 'PSO837G0057' => 'pso', 'QL02p093988' => 'qlo', 'QL03p016316' => 'qlo', 'QL03p016528' => 'qlo', 'QL03p016640' => 'qlo', 'QL03p016784' => 'qlo', 'QL05p047087' => 'qlo', 'QL06p013123' => 'qlo', 'QL08p041624' => 'qlo', 'QL08p041642' => 'qlo', 'QL08p041670' => 'qlo', 'QL08p041687' => 'qlo', 'QL08p041697' => 'qlo', 'QL09p005700' => 'qlo', 'QL09p026609' => 'qlo', 'QL12p018838' => 'qlo', 'RcHm_v2.0_Chr1g0336721' => 'rch', 'RcHm_v2.0_Chr1g0373061' => 'rch', 'RcHm_v2.0_Chr1g0373071' => 'rch', 'RcHm_v2.0_Chr1g0373081' => 'rch', 'RcHm_v2.0_Chr1g0383531' => 'rch', 'RcHm_v2.0_Chr3g0454011' => 'rch', 'RcHm_v2.0_Chr3g0457541' => 'rch', 'RcHm_v2.0_Chr3g0484961' => 'rch', 'RcHm_v2.0_Chr3g0487021' => 'rch', 'RcHm_v2.0_Chr4g0426121' => 'rch', 'RcHm_v2.0_Chr6g0290501' => 'rch', 'RcHm_v2.0_Chr6g0290521' => 'rch', 'RcHm_v2.0_Chr6g0290541' => 'rch', 'RcHm_v2.0_Chr7g0235761' => 'rch', 'Rhsim01G0292300' => 'rsi', 'Rhsim02G0002100' => 'rsi', 'Rhsim02G0142600' => 'rsi', 'Rhsim02G0162900' => 'rsi', 'Rhsim04G0025500' => 'rsi', 'Rhsim04G0242700' => 'rsi', 'Rhsim11G0097900' => 'rsi', 'Sabra02G0163600' => 'sbr', 'Sabra05G0008200' => 'sbr', 'Sabra05G0019500' => 'sbr', 'Sabra09G0119800' => 'sbr', 'Sabra13G0005800' => 'sbr', 'SalBow3G2697' => 'sbo', 'SalBow3G2875' => 'sbo', 'SalBow5G3970' => 'sbo', 'SalBow7G2455' => 'sbo', 'SalBow8G1638' => 'sbo', 'Sc05g0000280' => 'sci', 'Sc12g0003500' => 'sci', 'Sc16g0009170' => 'sci', 'Sed0001192' => 'sed', 'Sed0018754' => 'sed', 'SEGI_02973' => 'sgi', 'SEGI_03877' => 'sgi', 'SEGI_04713' => 'sgi', 'SEGI_10478' => 'sgi', 'SEGI_15094' => 'sgi', 'SEGI_39933' => 'sgi', 'SEGI_40977' => 'sgi', 'SGA_v2.0_scaffold334G49092' => 'sas', 'SGA_v2.0_scaffold376G50304' => 'sas', 'SGA_v2.0_scaffold5G02898' => 'sas', 'SGA_v2.0_scaffold64G22092' => 'sas', 'SGA_v2.0_scaffold9G04815' => 'sas', 'SHI18046' => 'shi', 'SMO347G0281' => 'smo', 'Solyc01g058160.3' => 'sly', 'Solyc01g058170.4' => 'sly', 'Solyc01g079230.4' => 'sly', 'Solyc01g100780.3' => 'sly', 'Solyc03g120030.1' => 'sly', 'Solyc03g121650.3' => 'sly', 'Solyc06g062570.1' => 'sly', 'Solyc06g072180.1' => 'sly', 'Solyc06g072190.1' => 'sly', 'Solyc06g072200.1' => 'sly', 'Solyc06g072450.1' => 'sly', 'Solyc07g055040.1' => 'sly', 'Sopen01g023650' => 'spe', 'Sopen01g031010' => 'spe', 'Sopen01g044280' => 'spe', 'Sopen03g038910' => 'spe', 'Sopen03g040460' => 'spe', 'Sopen06g022050' => 'spe', 'Sopen06g028480' => 'spe', 'Sopen06g028490' => 'spe', 'Sopen06g028500' => 'spe', 'Sopen06g028510' => 'spe', 'Sopen06g028520' => 'spe', 'Sopen06g028820' => 'spe', 'Sopen06g035420' => 'spe', 'Sopen06g035620' => 'spe', 'Sopen06g035630' => 'spe', 'Sopen07g027170' => 'spe', 'Sp1g05130' => 'spa', 'Sp1g07930' => 'spa', 'Sp3g05300' => 'spa', 'Sp5g01090' => 'spa', 'Sp6g06690' => 'spa', 'Sp7g03270' => 'spa', 'TAR362G0161' => 'tar', 'TAR626G1923' => 'tar', 'TAR633G2377' => 'tar', 'THA.LOC104800847' => 'tha', 'THA.LOC104802141' => 'tha', 'THA.LOC104802712' => 'tha', 'THA.LOC104816857' => 'tha', 'THA.LOC104817448' => 'tha', 'THA.LOC104823716' => 'tha', 'Thecc.01G318600' => 'tca', 'Thecc.04G160500' => 'tca', 'Thecc.04G306400' => 'tca', 'Thecc.05G041100' => 'tca', 'Thecc.05G041200' => 'tca', 'Thecc.05G325400' => 'tca', 'Thecc.06G170800' => 'tca', 'Thecc.06G170900' => 'tca', 'Thhalv10001340m.g' => 'esa', 'Thhalv10001344m.g' => 'esa', 'Thhalv10001489m.g' => 'esa', 'Thhalv10005813m.g' => 'esa', 'Thhalv10009453m.g' => 'esa', 'Thhalv10009728m.g' => 'esa', 'Thhalv10015933m.g' => 'esa', 'Thhalv10016065m.g' => 'esa', 'Thhalv10020194m.g' => 'esa', 'Thhalv10020690m.g' => 'esa', 'Thhalv10023057m.g' => 'esa', 'Thhalv10023671m.g' => 'esa', 'Thhalv10027025m.g' => 'esa', 'Thhalv10027168m.g' => 'esa', 'TPR.G11643' => 'tpr', 'TPR.G22463' => 'tpr', 'TPR.G2564' => 'tpr', 'TPR.G2597' => 'tpr', 'TPR.G31472' => 'tpr', 'TPR.G33881' => 'tpr', 'TPR.G39904' => 'tpr', 'TPR.G5408' => 'tpr', 'TWI12G0894' => 'twi', 'TWI14G0775' => 'twi', 'TWI39G0827' => 'twi', 'TWI56G1461' => 'twi', 'TWI59G0701' => 'twi', 'TWI63G0878' => 'twi', 'TWI75G0008' => 'twi', 'unitig_0.g288' => 'ugi', 'unitig_26.g9551' => 'ugi', 'unitig_899.g15628' => 'ugi', 'vmacro01581' => 'vma', 'vmacro01582' => 'vma', 'vmacro07970' => 'vma', 'vmacro07971' => 'vma', 'vmacro15168' => 'vma', 'vmacro15972' => 'vma', 'vmacro16895' => 'vma', 'VMungo0251G1194' => 'vmu', 'VMungo0720G2260' => 'vmu', 'VMungo1127G0414' => 'vmu', 'Zm00001eb113970' => 'zma', 'Zm00001eb162590' => 'zma', 'Zm00001eb162610' => 'zma', 'Zm00001eb201810' => 'zma', 'Zm00001eb354850' => 'zma' ) $gf_id = 'HOM05D000621' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000621' ) $data_identifier = 'HOM05D000621' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 7, 'aly' => (int) 14, 'aox' => (int) 26, 'arhy' => (int) 4, 'ath' => (int) 13, 'atr' => (int) 5, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 40, 'bol' => (int) 22, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 11, 'chi' => (int) 19, 'cru' => (int) 9, 'car' => (int) 7, 'ccan' => (int) 8, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 1, 'col' => (int) 7, 'cpa' => (int) 16, 'csa' => (int) 2, 'camsi' => (int) 7, 'dca' => (int) 21, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 38, 'fve' => (int) 10, 'gma' => (int) 8, 'ghi' => (int) 26, 'gra' => (int) 15, 'vvi' => (int) 2, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 5, 'lal' => (int) 6, 'lonja' => (int) 13, 'lja' => (int) 9, 'lsa' => (int) 11, 'mes' => (int) 5, 'mbi' => (int) 2, 'mdo' => (int) 17, 'mtr' => (int) 11, 'cme' => (int) 1, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 26, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 7, 'stu' => (int) 16, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppe' => (int) 12, 'psa' => (int) 27, 'pso' => (int) 10, 'qlo' => (int) 15, 'rch' => (int) 14, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 2, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 16, 'spa' => (int) 6, 'tar' => (int) 3, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb354850' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1